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PhD Studentship in Quantum Biology at the Univer ... (No replies)

Marco
3 years ago
Marco 3 years ago

PhD Studentship Opportunity: Vibrational coupling and non-adiabatic energy transfer in enzyme catalysis


University of Surrey

 
 Closing Date: Sunday, July 18, 2021
 
 Competition Funded PhD Project (Students Worldwide)

 

About the Project

We seek to deepen our understanding of enzyme catalysis by assessing the role of quantum mechanics, and non-adiabatic energy transfer in these fundamental biological processes and shed light on one of the most fascinating and long-standing problems in biochemistry.

In order to do this, we will address the role of non-adiabatic processes, including electronic and vibrational coupling, and intramolecular vibrational redistribution (IVR) on coherence and tunnelling in the function of enzymes. Our method will be based on computational modelling and quantum mechanical simulations. It has long been known that processes such as the photo-activated electron transfer and quantum tunnelling of protons are critical in helping enzymes catalyse biochemical reactions inside cells, but we have yet to fully understand the role of the cellular environment and the non-adiabatic energy transfer between the degrees of freedom of the system in enhancing these processes. QM simulations performed in a biological environment simulated through implicit and explicit solvent at biological conditions will help us understand the coupling between the dynamics at the surface of the enzyme and in the active site.

By deepening our quantitative understanding of the physical aspects, mechanisms and dynamics of enzyme catalysis, we will be able to assess the role of quantum mechanics in MADH, and more broadly, in fundamental biological processes involving proton transfer and dehydrogenation. We believe it is critical and timely that both state-of-the-art physical and chemical approaches are employed to understand the quantum nature and mechanisms of enzyme catalysis at the deepest level.

Proton transfer and non-adiabatic effects are critical in biochemical and biological systems and understanding how quantum effects such as tunnelling, coherence and quantum dissipation/relaxation influence the rate of proton transfer in enzymes, DNA, RNA and proteins will have a huge impact on our fundamental understanding of the life-chemistry. Aside from the importance of understanding the physics governing life processes and the impact and ramifications that our research could induce in academic research, we believe that our theoretical methods could have, in the long term, a lasting impact on areas related to quantum biology, such as medicine, genetics and catalysis.

The project will be conducted in the Leverhulme Trust-supported Quantum Biology Doctoral Training Centre at the University of Surrey; the world’s first quantum biology Doctoral Training Centre with 20 current students.

The supervisors for this project are Dr Marco Sacchi, Dr Brendan Howlin and Prof Jim Al-Khalili.

This is a 3-year project starting in October 2021.

Entry requirements

BSc/Masters, Physics or Chemistry.

English language requirements: IELTS Academic 6.5 or above (or equivalent) with 6.0 in each individual category.

How to apply

Applications should be submitted via the Quantum Biology PhD programme page on the "Apply" tab. Please provide CV and the names of two referees.

Please state clearly the studentship project at you would like to apply for.


Funding Notes

Full UK tuition fee covered (EU/Oversea tuition fee is not covered)
• Stipend at £15,609 p.a.
• Personal Computer (provided by the department)



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Ab initio (from electronic structure) calculation of complex processes in materials