The Department of Physics at the University of Ostrava, Czech Republic, announces an opening for a PhD position in the area of molecular modeling of biomolecules with a focus on molecular dynamics simulations of nucleic acids and proteins. The candidate will be involved (among others) in development of force fields for biomolecules using machine learning.

Field: Computational Chemistry and Physics, Biophysics

University: University of Ostrava

Location: Ostrava, Czech Republic

Advisors: Assoc. Prof. Petr Jurečka (https://orcid.org/0000-0002-3741-3672), Dr. Marie Zgarbová (https://orcid.org/0000-0003-0719-0268), see also http://ffol.upol.cz

What We Offer

• A fully-funded PhD position
• Access to supercomputing facilities
• Opportunities to participate in teaching activities
• Involvement in the Life & Environment Research Center Ostrava project, specifically within Research Program 3 – Modeling and Simulations (https://lerco.osu.eu/29453/modeling-and-simulation/)

Requirements:

• A strong background in one or more of the following areas: computational chemistry or physics, biomolecular simulations, molecular dynamics simulations, quantum chemistry, or related fields.
• A Master’s degree in one of the aforementioned or related disciplines.
• Experience with scripting, programming, and calculations using quantum chemistry codes (e.g., Gaussian, GAMESS) or molecular dynamics codes (e.g. Gromacs, Amber).
• Proficient written and oral communication skills in English.
• The ability to work independently and collaboratively.

Admission Procedure: the admission process begins with the submission of your application materials to [email protected] with the e-mail title: "PhD position in molecular modeling of biomolecules" by the 5th of May, 2024. Only shortlisted candidates will be contacted for the next steps.

Application Must Include:

• A detailed CV.
• A publication list.
• A cover letter detailing research interests, motivation, relevant expertise, and any other pertinent information.
• Names of two established researchers who can provide letters of recommendation.
• A completed form detailing experiences beyond basic academic requirements. [Download PDF or DOCX]

Optional Attachments:

• Diploma and diploma supplement (scans).
• Diploma thesis with supervisor’s and opponent’s assessments (PDF).
• Evaluation from the supervisor regarding the applicant's cooperation (signed PDF with contact details).
• Letters of recommendation (signed PDFs).
• Proof of English proficiency (ideally an internationally recognized certificate).

Next Steps in Admission:

• Shortlisted applicants will receive a task to complete.
• Applicants submitting high-quality work will be invited for an online interview.
• Further steps in the admission process will be communicated individually.